Coronavirus Resources     Metagenomics Resources

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General software || Protein related || Nucleotide related || Molecular evolution || Protein residue network || Antiviral drug design || Antibody database

 

 

 

 

 

 


Crystal structure of 2019-nCoV spike receptor-binding domain bound with ACE2 (ID:6M0J )

 

Spike protein PDB structures

 

Biomolecular Simulation Forum (Chinese)

 

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PyMOL
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PyMOL || Free open source version of PyMOL installation tutorial

PyMOL Wiki!

PyMOL Chinese Course ||High-quality PyMOL drawing tutorial

PyMOL latest version tutorial: teach you hand in hand

Probably the best pymol tutorial in the whole network

PyMOL Introduction and Instructions

The following are a PyMOL learning videos:

pymol useful video

Zhou Chenfen, the basic operation of PyMOL

Make a video with PyMOL

Use PyMOL to view SARS coronavirus non-structural protein model

Molecular Modeling with PyMOL

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AutoDock
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AutoDock || MGLTools

Autodock/Vina plugin for PyMOL

Bert de Groot

Ligand docking and binding site analysis with PyMOL and Autodock/Vina

AutoDock4 and AutoDockTools4 Automated Docking with Selective Receptor Flexibility

Tutorial on molecular docking with AutoDock-semi-flexible docking

AutoDock-4.2-Chinese version detailed tutorial

Autodock Molecular Docking & Conclusion

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AutoDock Vina
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AutoDock Vina

 

Receptors and ligands

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Homology modelling:

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SWISS-MODEL

HHPred9 server

Models:

I-TASSER

evaluation:

RAMPAGE

TM-score on-line

transmembrane helical segments testing:
TMHMM Server v. 2.0

MEMSAT

MEMPACK

 

 

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Open Babel
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Open Babel

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WinCoot
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WinCoot install and download

 

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rDock
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rDock

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PROVEAN
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PROVEAN || PROVEAN Web Server

PROVEAN (Protein Variation Effect Analyzer) is a software tool which predicts whether an amino acid substitution or indel has an impact on the biological function of a protein.

 

 

Our Focus

We take S protein as the research focus and take coronavirus recombination as the exploration direction.

 

 

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