彭司实验室

冠状病毒资源

艾滋病毒资源

病毒数据库

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软件汇总
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数据汇总
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论文汇总
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视频教程
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我们的进展
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小组成员入口
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Amber视频教程

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Amber主页
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视频教程
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1. HOW TO INSTALL AMBER Molecular dynamics

2. T1. AMBER MD Tutorials

3. T2. Amber Tutorial xLeap _ An Example with LEaP

4. T3.1 AMBER MD Setting up duplex DNA_ polyA polyT

5. T3.2 AMBER 2.1.2) Loading the structure into Leap

6. T3.4 Visualizing the trajectories with VMD

7. T3.5 Running Minimization and MD (in implicit solvent)

8. AMBER Running Minimization and MD (in explicit solvent)

9. AMBER - A case study in folding Trp-Cage (advanced analysis and clustering) (Rar文件，有可能无法下载）

10. AMBER18 Intermediate tutorial2_ Dynamics of the HIV-1 Integrase Core Domain _ DI

11. AMBER TUTORIAL _ Simulating the Green Fluorescent Protein

12. AMBER _ An Amber Lipid Force Field Tutorial

13. AMBER MD Tutorial_ A room-temperature ionic liquid

14. AMBER19 Modeling Material Systems _ Tutorials

15. Setting Up A Hydroxyapatite Slab in Water Box _ AMBER19 _ Tutorials

16. Simple replica exchange (REMD) with AMBER 18, and some cluster initial simulatio

17. AMBER19 Cluster Analysis with CPPTRAJ - ssRNA (script in description)

18. NMR Refinement of DNA and RNA Duplexes _ Structure refinement in AMBER Rar文件，有可能无法下载）

19. ANTECHAMBER _ Modeling a drug compound using antechamber and the Generalized Amb

AMBER

AMBER分子动力学程序包是由加州大学旧金山分校(University of California San Francisco,UCSF)的Peter A Kollman和其同事编写的，大约包含60多个程序，相互协调工作。