彭司华实验室

Coronavirus Resources

Metagenomics Resources

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General software ||

Protein related ||

Nucleotide related ||

Molecular evolution ||

Protein residue network ||

Antiviral drug design ||

Antibody database

Amber Tutorial

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Amber Home
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Video Tutorials
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1. HOW TO INSTALL AMBER Molecular dynamics

2. T1. AMBER MD Tutorials

3. T2. Amber Tutorial xLeap _ An Example with LEaP

4. T3.1 AMBER MD Setting up duplex DNA_ polyA polyT

5. T3.2 AMBER 2.1.2) Loading the structure into Leap

6. T3.4 Visualizing the trajectories with VMD

7. T3.5 Running Minimization and MD (in implicit solvent)

8. AMBER Running Minimization and MD (in explicit solvent)

9. AMBER - A case study in folding Trp-Cage (advanced analysis and clustering)

10. AMBER18 Intermediate tutorial2_ Dynamics of the HIV-1 Integrase Core Domain _ DI

11. AMBER TUTORIAL _ Simulating the Green Fluorescent Protein

12. AMBER _ An Amber Lipid Force Field Tutorial

13. AMBER MD Tutorial_ A room-temperature ionic liquid

14. AMBER19 Modeling Material Systems _ Tutorials

15. Setting Up A Hydroxyapatite Slab in Water Box _ AMBER19 _ Tutorials

16. Simple replica exchange (REMD) with AMBER 18, and some cluster initial simulatio

17. AMBER19 Cluster Analysis with CPPTRAJ - ssRNA (script in description)

18. NMR Refinement of DNA and RNA Duplexes _ Structure refinement in AMBER

19. ANTECHAMBER _ Modeling a drug compound using antechamber and the Generalized Amb

Our Focus

We take S protein as the research focus and take coronavirus recombination as the exploration direction.