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计算机辅助药物设计
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1. Trends in GPCR drug discovery: new agents, targets and indications. NATURE REVIEWS DRUG DISCOVERY.2017.12
2. GPCRmd uncovers the dynamics of the 3D-GPCRome.NATURE METHODS.2020
3. Opportunities and challenges for drug discovery in modulating Adhesion G protein-coupled receptor (GPCR) functions. EXPERT OPINION ON DRUG DISCOVERY. 2020
4. Identifying GPCR-drug interaction based on wordbook learning from sequences.BMC BIOINFORMATICS.2020.2 (机器学习)
5. Impact of GPCR Structures on Drug Discovery. Cell. 2020.4
6. Structure-Based Virtual Screening Accelerates GPCR Drug Discovery. TRENDS IN PHARMACOLOGICAL SCIENCES. 2020.6
7. G Protein-Coupled Receptors in Asthma Therapy: Pharmacology and Drug Action. PHARMACOLOGICAL REVIEWS. 2020.1
8. Recent Insights from Molecular Dynamics Simulations for G Protein-Coupled Receptor Drug Discovery. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2019.9
9. THE CONCISE GUIDE TO PHARMACOLOGY 2015/16: G protein-coupled receptors. BRITISH JOURNAL OF PHARMACOLOGY . 2015.12
10. G Protein-Coupled Receptors in Cancer. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES .2016.8
11. Crystal structure of rhodopsin: A G protein-coupled receptor. Science. 2000.8. (经典文章,引用4500+)
12. Structure-based drug screening for G-protein-coupled receptors. TRENDS IN PHARMACOLOGICAL SCIENCES.2012. 5
13 Virtual Screening of Human Class-A GPCRs Using Ligand Profiles Built on Multiple Ligand Receptor Interactions. JOURNAL OF MOLECULAR BIOLOGY.2020.8.
14. eQuery: an interactive graph database for visualizing the GPCR superfamily. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.2019.6
15. Automated discovery of GPCR bioactive ligands. CURRENT OPINION IN STRUCTURAL BIOLOGY.2019.4
16. Machine Learning to Identify Flexibility Signatures of Class A GPCR Inhibition. BIOMOLECULES.2020.3 (机器学习)
17. Molecular signatures of G-protein-coupled receptors. 2013.2 (经典文章,引用833+)
18. GPCRdb in 2018: adding GPCR structure models and ligands. NUCLEIC ACIDS RESEARCH.2018.11
19. Structure and dynamics of GPCR signaling complexes. NATURE STRUCTURAL & MOLECULAR BIOLOGY . 2018.1
20. New Binding Sites, New Opportunities for GPCR Drug Discovery. TRENDS IN BIOCHEMICAL SCIENCES.2019.4
21. Exploring a new ligand binding site of G proteincoupled receptors. CHEMICAL SCIENCE .2018.8
22. GPCRdb: an information system for G protein-coupled receptors. NUCLEIC ACIDS RESEARCH. 2016. 1
23. An online resource for GPCR structure determination and analysis. NATURE METHODS. 2019.2
24. GPCR drug discovery: integrating solution NMR data with crystal and cryo-EM structures. NATURE REVIEWS DRUG DISCOVERY. 2019.1
25. Frederic Bassilana, Mark Nash, Marie-Gabrielle Ludwig. Adhesion G protein-coupled receptors: opportunities for drug discovery. Nat Rev Drug Discov. 2019 Nov;18(11):869-884.
摘要:
粘附G蛋白偶联受体(aGPCR)是超家族GPCR的五个主要家族之一,具有几种非典型特征,包括大的多域N末端和一个高度保守的区域,可以自动进行蛋白水解。尽管GPCR总体上具有公认的药理学可操作性,但目前尚无批准针对aGPCR家族33个成员中任何一个的疗法,也未进行临床试验。但是,近年来,人类遗传学和临床前研究加强了aGPCR与疾病之间的联系。这,加上对其功能复杂性的更深入的了解,已经导致人们对aGPCR作为药物靶标的兴趣日益增长。因此,对aGPCR靶标进行优先排序的框架和开发aGPCR调节剂的支持方法在利用该家族尚未开发的治疗潜力方面可能很有价值。考虑到这一点,在这里我们以ADGRG1为例,讨论药物发现在调节aGPCR功能方面的独特机遇和挑战,包括靶标识别,靶标验证,分析开发和安全性考量。
26. Cryo-EM structure of the active, G(s)- protein complexed, human CGRP receptor. NATURE. 2018.9
27. Phase-plate cryo-EM structure of a biased agonist-bound human GLP-1 receptor-Gs complex. Nature .2018.3
28. Cryo-EM structure of the activated GLP-1 receptor in complex with a G protein. Nature. 2017.6
29. The G-protein-coupled receptors in the human genome form five main families. Phylogenetic analysis, paralogon groups, and fingerprints.MOLECULAR PHARMACOLOGY. 2003.6 DOI: 10.1124/mol.63.6.1256
29. Structure of the full-length glucagon class B G-protein-coupled receptor. Nature. 2017.6 (中科院上海药物研究所吴蓓丽、王明伟和蒋华良)
30. Human GLP-1 receptor transmembrane domain structure in complex with allosteric modulators. Nature. 2017.6 (上海科技大学iHuman研究所Raymond C. Stevens、复旦大学药学院王明伟、上海科技大学iHuman研究所刘志杰)
31. Crystal structure of a multi-domain human smoothened receptor in complex with a super stabilizing ligand. NATURE COMMUNICATIONS.2017.5.
(上海科技大学iHuman研究所徐菲、陶厚朝和复旦大学药学院谭文福)