Coronavirus HIV Influnenza hepatitis B hepatitis C EBV HPV HTLV-1 Virus Database
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software
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Data
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paper
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VIP
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Data base and Datasets
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IEDB
  免疫表位数据库（IEDB）使用指南
  免疫表位分析的终极武器：免疫表位数据库IEDB
  免疫信息学_MHC-Ⅱ的抗原表位分析软件IEDB教程
  Overview of the Immune Epitope Database (IEDB)
  IEDB - the Immune Epitope Database
  Immune Epitope Database (IEDB) 2015 User Workshop - Analysis Tools
  Immune Epitope Database (IEDB) 2015 User Workshop - MHC class I binding prediction
  2020 User Workshop – 2.6 – B Cell Epitope Prediction
  IEDB Analysis Resource – Package of tools for immune epitope prediction and analysis, Dr. Sinu Paul
   
   
 

VDJdb || vdjdb-db （GitHub）

VDJdb is a curated database of T-cell receptor (TCR) sequences with known antigen specificities. The primary goal of VDJdb is to facilitate access to existing information on T-cell receptor antigen specificities, i.e. the ability to recognize certain epitopes in a certain MHC contexts.

这个数据库专注于T细胞受体（TCR）与其特异性表位的相互作用，提供了大量的TCR序列与其对应的MHC限制性表位。

如何过滤与下载VDJdb
   
   
   
 

McPAS-TCR

McPAS-TCR is a manually curated catalogue of T cell receptor (TCR) sequences that were found in T cells associated with various pathological conditions in humans and in mice. It is meant to link TCR sequences to their antigen target or to the pathology and organ with which they are associated.

The database can be queried by disease condition, T cell type, tissue, epitope, source organism, MHC restriction, assay type and other criteria.


McPAS-TCR是一个手工策划的数据库，收录了在与人类和小鼠的各种病理条件相关的T细胞中发现的T细胞受体（TCR）序列。其目的是将TCR序列与它们的抗原目标或它们相关的病理和器官联系起来。

该数据库可以根据疾病条件、T细胞类型、组织、表位、来源生物、MHC限制性、检测类型以及其他标准进行查询。

如何过滤和下载McPAS-TCR

   
   

Dataset

Anthem related paper： Anthem: a user customised tool for fast and accurate prediction of binding between peptides and HLA class I molecules. Brief Bioinform. 22, bbaa415 (2021)
TransPHLA-AOMP： Related paper ： A transformer-based model to predict peptide-HLA class I binding and optimize mutated peptides for vaccine design.(2022)NATURE MACHINE INTELLIGENCE
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

 

 

 

Georgia HIV Surveillance Data

https://www.cdc.gov/mmwr/volumes/72/wr/pdfs/mm7210a3-H.pdf

https://dph.georgia.gov/flu-activity-georgia

 

 

 

Influenza virus

Influenza virus is divided into three types: A, B, and C. The influenza virus discovered in recent years will be classified as type D. Influenza viruses can cause infection and disease in a variety of animals such as humans, poultry, pigs, horses, and bats, and are the causative agent of human and animal diseases such as human influenza, avian influenza, swine influenza, and equine influenza.