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计算机辅助药物设计
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视频教程
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重要链接
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小组成员进入
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Amber视频教程

 

 

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Amber主页
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1. HOW TO INSTALL AMBER Molecular dynamics

2. T1. AMBER MD Tutorials

3. T2. Amber Tutorial xLeap _ An Example with LEaP

4. T3.1 AMBER MD Setting up duplex DNA_ polyA polyT

5. T3.2 AMBER 2.1.2) Loading the structure into Leap

6. T3.4 Visualizing the trajectories with VMD

7. T3.5 Running Minimization and MD (in implicit solvent)

8. AMBER Running Minimization and MD (in explicit solvent)

9. AMBER - A case study in folding Trp-Cage (advanced analysis and clustering) (Rar文件,有可能无法下载)

10. AMBER18 Intermediate tutorial2_ Dynamics of the HIV-1 Integrase Core Domain _ DI

 

11. AMBER TUTORIAL _ Simulating the Green Fluorescent Protein

12. AMBER _ An Amber Lipid Force Field Tutorial

13. AMBER MD Tutorial_ A room-temperature ionic liquid

14. AMBER19 Modeling Material Systems _ Tutorials

15. Setting Up A Hydroxyapatite Slab in Water Box _ AMBER19 _ Tutorials

16. Simple replica exchange (REMD) with AMBER 18, and some cluster initial simulatio

17. AMBER19 Cluster Analysis with CPPTRAJ - ssRNA (script in description)

18. NMR Refinement of DNA and RNA Duplexes _ Structure refinement in AMBER Rar文件,有可能无法下载)

19. ANTECHAMBER _ Modeling a drug compound using antechamber and the Generalized Amb

 

计算机辅助药物设计

计算机辅助药物设计(computer aided drug design)是以计算化学为基础,通过计算机的模拟、计算和预测药物与受体生物大分子之间的关系,设计和优化先导化合物的方法。计算机辅助药物设计实际上就是通过模拟和计算受体与配体的这种相互作用,进行先导化合物的优化与设计。计算机辅助药物设计包括活性位点分析法、数据库搜寻、全新药物设计等。

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