=========================
非蝙蝠类SARS-like病毒基因组
=========================
========
基因组汇总
========
=======
数据汇总
=======

果子狸 (Civet):

SZ16 (果子狸,管轶,2003),Beta

SZ3 (果子狸,管轶,2003),Beta

A001 (Wang,H., Kan,B. and Xu,J.,Sub (23-APR-2009),Beta

PC4-227 (Zhao,G.P., PNAS,Sub (03-MAY-2004),Beta

PC4-136 (Zhao,GP, PNAS,Subd (03-MAY-2004),Beta

PC4-13 (Zhao,GP, PNAS,Sub (03-MAY-2004),Beta

civet007 (果子狸,管轶,2004),Beta

civet010 (果子狸,管轶) (11-MAR-2004),Beta

civet020 (Xu,J., Kan,B., Yan,M.)Sub (11-MAR-2004) ,Beta

B039 ( Xu,Y.)Sub (15-JUL-2004) ,Beta

A022 (果子狸,管轶,2003) Sub (15-JUL-2004),Beta

HC/SZ/61/03,Beta

猪 (Porcine):

Alphacoronavirus 1 ( Ref.Seq.,Enjuanes,L.08-FEB-2000), Alpha

Porcine epidemic diarrhea virus (RefSeq., Tobler,K., 1993),Alpha

HKU15-155 (Ref. Seq., Woo,P.C.Y, 2010), Delta

HKU15 strain OH1987 (31-Jan-2014, Zhang,Y.) , Delta

HKU15 strain HKU15-44 (Yuen,K.Y., 2009), Delta

HKU15 strain MI6148 (18-Mar-2014, Zhang,Y., USA), Delta

HKU15 strain NE3579 (21-Feb-2014, Zhang,Y. , USA), Delta

HKU15 strain PA3148 (18-Feb-2014, Zhang,Y. , USA), Delta

HKU15 strain KY4813 (7-Mar-2014, Zhang,Y. , USA), Delta

HKU15 strain SD3424 (20-Feb-2014, Zhang,Y. , USA), Delta

HKU15 strain IL2768 (12-Feb-2014, Zhang,Y. , USA), Delta

HKU15 strain IN2847 (13-Feb-2014, Zhang,Y. , USA), Delta

HKU15 strain OH11846 (7-May-2014, Zhang,Y. , USA), Delta

HKU15 strain Michigan/8977/2014 (17-May-2014, Swenson,S.L.), Delta

HKU15- S582N (13-Feb-2014, Yuen,K.Y., 香港), Delta?

Hku15-S579N2014-02-13,Fong,J.Y.H., 香港), Delta?

 

穿山甲 (Pangolin):

MP789a (South China Sea Fisheries Research Institute)29-Mar-2019, Beta

PCoV_GX-P2V (2018, MT072864)

PCoV_GX-P3B (2017, MT072865)

PCoV_GX-P4L (2017, MT040333)

PCoV_GX-P1E (2017, MT040334)

PCoV_GX-P5L (2017, MT040335 )

PCoV_GX-P5E(2017, MT040336)

雪貂 (Ferret :

FRCoV-NL-2010 (Ref. Seq., Netherlands,2010, Haagmans,B.L.)

FRCoV-NL-2010 (Ref. Seq., Haagmans,B.L., 2010), Alpha

 

(Mink):

WD1127 (Ref.Seq.,Saif,L.J. 01-Jan-1998) , Alpha

 

白鲸:

SW1 (Ref. Seq., Mihindukulasuriya,K.A, 21-AUG-2007sub),Gamma

 



褐家鼠( 大鼠, 褐鼠, 大白鼠, 挪威鼠,Rattus norvegicus):

China Rattus coronavirus HKU24: RtCoV-HKU24

(Ref. Seq., Zheng,B.J., 17-May-2012,Beta)

 

小鼠(Mouse):

MHV-A59 (Ref. Seq., 01-AUG-2000, Weiss,S.R., Beta)


大鼠(Rat):


Lucheng-19 (Ref. Seq, Zhang,Y.-Z., 2013, Alpha)

Parker (Ref. Seq, 13-JUL-2009, Beta)

 

刺猬 (Erinaceus europaeus, Hedgehog):

EriCoV-1 (Ref. Seq, Drexler,J.F., 2012,Beta)

ErinaceusCoV/2012-216/GER/2012 , Beta

ErinaceusCoV/2012-174/GER/2012, Beta

Hedgehog coronavirus 1, Beta

 

野鸭 (Wigeon):


HKU20 (Ref. Seq., 2008, Woo,P.C.Y.,) , Delta


夜莺 (Bulbul):

HKU11-934 (Ref. Seq., Woo,P.C.Y., Jan-2007), Delta


文鸟 (Munia):

HKU13-3514 (Ref. Seq., Woo,P.C.Y. Apr-2007) , Delta


绣眼鸟 (White-eye):

HKU16 (Ref. Seq., Woo,P.C, 2007), Delta


五位鹭 (Night-heron):


HKU19 (Ref. Seq., Woo,P.C.Y,2007), Delta


黑水鸡 (Common-moorhen):

HKU21 (Ref. Seq., Woo,P.C.Y, 2007), Delta

 

 

 

上海市浦东新区沪城环路999号