Google Scholar (link to this website: https://scholar.google.com/citations?hl=en&user=1sdUrZMAAAAJ )
44. Sihua Peng. HIV-1 M group subtype classification using deep learning approach. Comput Biol Med. 2024 Oct 5;183:109218. doi: 10.1016/j.compbiomed.2024.109218
43. Shihang Wang, Zhehan Shen, Taigang Liu, Sihua Peng. DeepmRNALoc: A novel predictor of eukaryotic mRNA subcellular localization based on deep learning. (通信作者) . Molecules 2023, 28, 2284, pdf
42.Cai Wei, Dan Sun, Wenliang Yuan, Lei Li, Chaoxu Dai, Zuozhou Chen, Xiaomin Zeng, Shihang Wang, Yuyang Zhang, Shouwen Jiang, Zhichao Wu, Dong Liu, Linhua Jiang, and Sihua Peng. Metagenomics revealing molecular profiling of microbial community structure and metabolic capacity in Bamucuo, Tibet .
Environmental Research. 217 (2023) 11484 (通信作者) pdf
41. Xiaoyu Liu, Jingying Zhao, Sicong Li, Cai Wei, Shihang Wang, Xuanyu Xu, Yin Zheng, Xiangyu Deng, Wenliang Yuan, Xiaomin Zeng, Sihua Peng.Clarifying real receptor binding site between coronavirus HCoV-HKU1 and 9-O-Ac-Sia based on molecular docking.
J Bioinform Comput Biol. 2022 Feb;20(1):2150034. doi: 10.1142/S0219720021500347. （通信作者）pdf
40. Shihang Wang, Xuanyu Xu, Cai Wei, Sicong Li, Jingying Zhao, Yin Zheng, Xiaoyu Liu, Xiaomin Zeng, Wenliang Yuan, Sihua Peng. Molecular evolutionary characteristics of SARS‐CoV‐2 emerging in the United States.
J Med Virol. 2022, 1‐8. （通信作者）pdf
39.Yuan, Wenliang; Cai, Wei; Huang, Xiao; et al. Prognostic value of immune scores in the microenvironment of colorectal cancer.
Oncology letters. 2020, 20(5): 256
（通信作者） pdf
38. Guli Jiang, Jing Mu, Xing Liu, Xiangni Peng,
Feiya Zhong, Wenliang Yuan, Fang Deng, Xiaoning Peng, Sihua Peng &
Xiaomin Zeng. Prognostic value of miR-21 in gliomas: comprehensive study
based on meta-analysis and TCGA dataset validation.
Scientific Reports. 2020,10: 4220 （通信作者）pdf
37. Huang, Xiao; Cai, Wei; Yuan, Wenliang; Peng,
Sihua. Identification of key lncRNAs as prognostic prediction models for
colorectal cancer based on LASSO.
International journal of clinical and experimental pathology. 2020, 13:675-684 （通信作者）pdf
36.Yuan W, Jiang S, Sun D, Wu
Z, Wei C, Dai C, Jiang L, Peng S.Transcriptome profiling analysis of
sex-based differentially expressed mRNAs and lncRNAs in the brains of
mature zebrafish (Danio rerio).
BMC Genomics. 2019 Nov 8;20(1):830. （通信作者） pdf
35.Yuan W, Liu L, Wei C, Li
X, Sun D, Dai C, Li S, Peng S, Jiang L.Identification and meta-analysis
of copy number variation-driven circadian clock genes for colorectal
cancer.
Oncol Lett. 2019 Nov;18(5):4816-4824. （通信作者）pdf
34.Yuan W, Peng S, Wang J,
Wei C, Ye Z, Wang Y, Wang M, Xu H, Jiang S, Sun D, Dai C, Jiang L, Li
X.Identification and characterization of circRNAs as competing
endogenous RNAs for miRNA-mRNA in colorectal cancer. pdf
PeerJ. 2019 Sep 19;7:e7602.
33.Li Y, Li W, Zeng X, Tang
X, Zhang S, Zhong F, Peng X, Zhong Y, Rosol TJ, Deng X, Liu Z, Peng S,
Peng X.The role of microRNA-148a and downstream DLGAP1 on the molecular
regulation and tumor progression on human glioblastoma.
Oncogene. 2019 Nov;38(47):7234-7248. （通信作者）pdf
32.Li L, Jiang L, Peng S.Protein Network Analysis of the Fifth Chromosome of Zebrafish.
J Comput Biol. 2019 Aug 28. doi: 10.1089/cmb.2019.0157.
31.Chen L, Lu Y, Li W, Ren Y,
Yu M, Jiang S, Fu Y, Wang J, Peng S, Bilyk KT, Murphy KR, Zhuang X,
Hune M, Zhai W, Wang W, Xu Q, Cheng CC.The genomic basis for colonizing
the freezing Southern Ocean revealed by Antarctic toothfish and
Patagonian robalo genomes.
Gigascience. 2019 Apr 1;8(4). pii: giz016.
30.Yuan W, Li X, Liu L, Wei
C, Sun D, Peng S, Jiang L.Comprehensive analysis of lncRNA-associated
ceRNA network in colorectal cancer.
Biochem Biophys Res Commun. 2019 Jan 8;508(2):374-379. （通信作者）
29. 彭司华, 江守文, 孙丹, 吴智超, 陈洁. 宏基因组学技术在水产动物病毒鉴定中的应用.
江苏农业学报, 2019, 35(1): 229-237.（通信作者）
28. 彭司华,孙丹,袁文亮,卫偲. 通过宏基因组学发现生物催化剂.
应用与环境生物学报, 2019, 25(2): 463-472.（通信作者）
27. 彭司华,吴智超,孙丹,谭双配,王怡鸣,文登鑫. 宏基因组学在抗生素抗性基因鉴定中的应用.
基因组学与应用生物学. 2019, 38(9):4102-4109.（通信作者）
26. 孙丹,袁文亮,彭司华. 长读长测序技术在宏基因组学研究中的应用.
生命科学,2018, 30(8):896-905.（通信作者）
25. .Zhang D, Yu M, Hu P,
Peng S, Liu Y, Li W, Wang C, He S, Zhai W, Xu Q, Chen L.Genetic
Adaptation of Schizothoracine Fish to the Phased Uplifting of the
Qinghai-Tibetan Plateau.
G3 (Bethesda). 2017 Apr 3;7(4):1267-1276.
24.Xu Q, Zhang C, Zhang D,
Jiang H, Peng S, Liu Y, Zhao K, Wang C, Chen L.Analysis of the
erythropoietin of a Tibetan Plateau schizothoracine fish (Gymnocypris
dobula) reveals enhanced cytoprotection function in hypoxic
environments.
BMC Evol Biol. 2016 Jan 15;16:11. doi: 10.1186/s12862-015-0581-0.
23.Xu Q, Cai C, Hu X, Liu Y,
Guo Y, Hu P, Chen Z, Peng S, Zhang D, Jiang S, Wu Z, Chan J, Chen
L.Evolutionary suppression of erythropoiesis via the modulation of TGF-β
signalling in an Antarctic icefish.
Mol Ecol. 2015 Sep;24(18):4664-78.
22.Sylvester KG, Ling XB, Liu
GY, Kastenberg ZJ, Ji J, Hu Z, Wu S, Peng S, Abdullah F, Brandt ML,
Ehrenkranz RA, Harris MC, Lee TC, Simpson BJ, Bowers C, Moss RL.Urine
protein biomarkers for the diagnosis and prognosis of necrotizing
enterocolitis in infants.
J Pediatr. 2014 Mar;164(3):607-12.e1-7.
21.李小波,彭司华.多类别肿瘤分类的特征基因选择方法研究.
复旦学报（自然科学版）.2014, 53(3):305-312.
20.Li X, Peng
S.Identification of metastasis-associated genes in colorectal cancer
through an integrated genomic and transcriptomic analysis.
Chin J Cancer Res. 2013 Dec;25(6):623-36.
19.Sylvester KG, Ling XB, Liu
GY, Kastenberg ZJ, Ji J, Hu Z, Peng S, Lau K, Abdullah F, Brandt ML,
Ehrenkranz RA, Harris MC, Lee TC, Simpson J, Bowers C, Moss RL.A novel
urine peptide biomarker-based algorithm for the prognosis of necrotising
enterocolitis in human infants.
Gut. 2014 Aug;63(8):1284-92.
18.Peng S, Zhu Y, Lü B, Xu F,
Li X, Lai M.TCF7L2 gene polymorphisms and type 2 diabetes risk: a
comprehensive and updated meta-analysis involving 121,174 subjects.
Mutagenesis. 2013 Jan;28(1):25-37.
17.Ling XB, Macaubas C,
Alexander HC, Wen Q, Chen E, Peng S, Sun Y, Deshpande C, Pan KH, Lin R,
Lih CJ, Chang SY, Lee T, Sandborg C, Begovich AB, Cohen SN, Mellins
ED.Correlation analyses of clinical and molecular findings identify
candidate biological pathways in systemic juvenile idiopathic arthritis.
BMC Med. 2012 Oct 23;10:125.
16.Ling XB, Kanegaye JT, Ji
J, Peng S, Sato Y, Tremoulet A, Burns JC, Cohen HJ.Point-of-care
differentiation of Kawasaki disease from other febrile illnesses.
J Pediatr. 2013 Jan;162(1):183-188.e3.
15.Li X, Peng S, Chen J, Lü
B, Zhang H, Lai M.SVM-T-RFE: a novel gene selection algorithm for
identifying metastasis-related genes in colorectal cancer using gene
expression profiles.
Biochem Biophys Res Commun. 2012 Mar 9;419(2):148-53.
14.Ling XB, Lau K, Kanegaye
JT, Pan Z, Peng S, Ji J, Liu G, Sato Y, Yu TT, Whitin JC, Schilling J,
Burns JC, Cohen HJ.A diagnostic algorithm combining clinical and
molecular data distinguishes Kawasaki disease from other febrile
illnesses.
BMC Med. 2011 Dec 6;9:130.
13.阳赣萍,彭司华,左双燕,王一任,彭小宁,曾小敏. 中国人群瘦素受体Gln223Arg、Pr01019Pro基因多态性与肥胖关联性的Meta分析.
中华流行病学杂志.1211, 32(10):1037-1042.
12.Peng S, Zhu Y, Xu F, Ren X, Li X, Lai M.FTO gene polymorphisms and obesity risk: a meta-analysis.
BMC Med. 2011 Jun 8;9:71.
11.Peng S, Lü B, Ruan W, Zhu
Y, Sheng H, Lai M.Genetic polymorphisms and breast cancer risk: evidence
from meta-analyses, pooled analyses, and genome-wide association
studies.
Breast Cancer Res Treat. 2011 Jun;127(2):309-24.
10.Li X, Chen J, Lü B, Peng
S, Desper R, Lai M.-8p12-23 and +20q are predictors of subtypes and
metastatic pathways in colorectal cancer: construction of tree models
using comparative genomic hybridization data.
OMICS. 2011 Jan-Feb;15(1-2):37-47.
9.Peng S, Zeng X, Li X, Peng X, Chen L.Multi-class cancer classification through gene expression profiles: microRNA versus mRNA.
J Genet Genomics. 2009 Jul;36(7):409-16.
8.Peng X, Zeng X, Peng S, Deng D, Zhang J.The association risk of male subfertility and testicular cancer: a systematic review.
PLoS One. 2009;4(5):e5591.
7.Dai Z, Chen Z, Ye H, Zhou
L, Cao L, Wang Y, Peng S, Chen L.Characterization of microRNAs in
cephalochordates reveals a correlation between microRNA repertoire
homology and morphological similarity in chordate evolution.
Evol Dev. 2009 Jan-Feb;11(1):41-9.
6.彭小宁 彭司华 曾小敏. 卵巢癌早期诊断方法的研究进展.
国际病理科学与临床杂志.2007, 27(6):489-492.
5. Dong H, Deng Y, Chen J,
Wang S, Peng S, Dai C, Fang Y, Shao J, Lou Y, Li D.An exploration of
3'-end processing signals and their tissue distribution in Oryza sativa.
Gene. 2007 Mar 15;389(2):107-13.
4. Multiclass cancer
classification and biomarker discovery using GA-based algorithms.Liu JJ,
Cutler G, Li W, Pan Z, Peng S, Hoey T, Chen L, Ling XB.
Bioinformatics. 2005 Jun 1;21(11):2691-7.
3.彭司华,周洪亮,彭小宁,杜维.系统生物学的分析与建模.
信息与控制.2004, 33(4):457-462.
2.Peng S, Xu Q, Ling XB, Peng
X, Du W, Chen L.Molecular classification of cancer types from
microarray data using the combination of genetic algorithms and support
vector machines.
FEBS Lett. 2003 Dec 4;555(2):358-62.
1. 彭司华,樊龙江,彭小宁,庄树林,杜维,陈良标.Splicing-site recognition of rice (Oryza sativa L.)DNA sequences by support vector machines.
浙江大学学报(英文版).2003, 4(5):573-577. |